ncsw_data.source.reaction.miscellaneous.utility

The ncsw_data.source.reaction.miscellaneous.utility package initialization module.

Submodules

• ncsw_data.source.reaction.miscellaneous.utility.download
• ncsw_data.source.reaction.miscellaneous.utility.extraction
• ncsw_data.source.reaction.miscellaneous.utility.formatting

Classes

MiscellaneousReactionDataSourceDownloadUtility	The miscellaneous chemical reaction data source download utility class.
MiscellaneousReactionDataSourceExtractionUtility	The miscellaneous chemical reaction data source extraction utility class.
MiscellaneousReactionDataSourceFormattingUtility	The miscellaneous chemical reaction data source formatting utility class.

Package Contents

class ncsw_data.source.reaction.miscellaneous.utility.MiscellaneousReactionDataSourceDownloadUtility

The miscellaneous chemical reaction data source download utility class.

static download_v_20131008_kraut_h_et_al(output_directory_path: str | os.PathLike[str]) → None

Download the data from the v_20131008_kraut_h_et_al version of the data source.

Parameters:

output_directory_path – The path to the output directory where the data should be downloaded.

static download_v_20161014_wei_j_n_et_al(output_directory_path: str | os.PathLike[str]) → None

Download the data from the v_20161014_wei_j_n_et_al version of the data source.

Parameters:

output_directory_path – The path to the output directory where the data should be downloaded.

static download_v_20200508_grambow_c_et_al(version: str, output_directory_path: str | os.PathLike[str]) → None

Download the data from a v_*_20200508_grambow_c_et_al version of the data source.

Parameters:

• version – The version of the data source.

• output_directory_path – The path to the output directory where the data should be downloaded.

static download_v_golden_dataset_by_20211102_lin_a_et_al(output_directory_path: str | os.PathLike[str]) → None

Download the data from the v_golden_dataset_by_20211102_lin_a_et_al version of the data source.

Parameters:

output_directory_path – The path to the output directory where the data should be downloaded.

static download_v_rdb7_by_20220718_spiekermann_k_et_al(output_directory_path: str | os.PathLike[str]) → None

Download the data from the v_rdb7_by_20220718_spiekermann_k_et_al version of the data source.

Parameters:

output_directory_path – The path to the output directory where the data should be downloaded.

static download_v_orderly(version: str, output_directory_path: str | os.PathLike[str]) → None

Download the data from a v_orderly_* version of the database.

Parameters:

• version – The version of the database.

• output_directory_path – The path to the output directory where the data should be downloaded.

class ncsw_data.source.reaction.miscellaneous.utility.MiscellaneousReactionDataSourceExtractionUtility

The miscellaneous chemical reaction data source extraction utility class.

static extract_v_20131008_kraut_h_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Extract the data from the v_20131008_kraut_h_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is downloaded.

• output_directory_path – The path to the output directory where the data should be extracted.

static extract_v_golden_dataset_by_20211102_lin_a_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Extract the data from the v_golden_dataset_by_20211102_lin_a_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is downloaded.

• output_directory_path – The path to the output directory where the data should be extracted.

class ncsw_data.source.reaction.miscellaneous.utility.MiscellaneousReactionDataSourceFormattingUtility

The miscellaneous chemical reaction data source formatting utility class.

static format_v_20131008_kraut_h_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from the v_20131008_kraut_h_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.

static format_v_20161014_wei_j_n_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from the v_20161014_wei_j_n_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.

static format_v_20200508_grambow_c_et_al(version: str, input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from a v_*_20200508_grambow_c_et_al version of the data source.

Parameters:

• version – The version of the data source.

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.

static format_v_golden_dataset_by_20211102_lin_a_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from the v_golden_dataset_by_20211102_lin_a_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.

static format_v_rdb7_by_20220718_spiekermann_k_et_al(input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from the v_rdb7_by_20220718_spiekermann_k_et_al version of the data source.

Parameters:

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.

static format_v_orderly(version: str, input_directory_path: str | os.PathLike[str], output_directory_path: str | os.PathLike[str]) → None

Format the data from a v_orderly_* version of the database.

Parameters:

• version – The version of the chemical reaction database.

• input_directory_path – The path to the input directory where the data is extracted.

• output_directory_path – The path to the output directory where the data should be formatted.